BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007A10SP1|AL425627
(687 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1369 1257 0.0
>3x_Contig1369
Length = 7461
Score = 1257 bits (623), Expect = 0.0
Identities = 662/686 (96%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 2 cgcgtcatcatcacggtctttgttcacatgatgaacagtcgctcttgttgaaggcacaga 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4958 cgcgtcatcatcacggtctttgttcaca-gatgaacagtcgctcttgttgaaggcacaga 5016
Query: 62 tccaatctcttaagatgatggctaaccacatggtcgtaccaccagagattatgatggtca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5017 tccaatctcttaagatgatggctaaccacatggtcgtaccaccagagattatgatggtca 5076
Query: 122 ttgatcggtctttgaccwatttwctggttttcaaatccattctactggcgttgagtgccg 181
||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 5077 ttgatcggtctttgaccaatttactggatttcaaatccattctactggcgttgagtgccg 5136
Query: 182 atttacwagctcataatgctggccakcagatgchacctccagtacaacaacaacaacaac 241
|||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 5137 atttacaagctcataatgctggccagcagatgcaacctccagtacaacaacaacaacaac 5196
Query: 242 aacaacaacaacagawtwwtgtaccgcagcagaagctttcgcctcaggtacgccaaggcg 301
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 aacaacaacaacagaataatgtaccgcagcagaagctttcgcctcaggtacgccaaggcg 5256
Query: 302 tgaagawaccwktacagawggttcgtcawcccaaaaagggtaaggtggaatcaccagtag 361
|||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5257 tgaagaaaccagtacagaaggttcgtcaacccaaaaagggtaaggtggaatcaccagtag 5316
Query: 362 cagcagcttcgcwaccacttgtacaawataacatgcctgctcaactggtaaatwccacgg 421
|||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 5317 cagcagcttcgcaaccacttgtacaaaataacatgcctgctcaactggtaaataccacgg 5376
Query: 422 cwaatatnawcccagcttctcctatagtgacgtcagatcccactcctatggcagttcagt 481
| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5377 caaatataaacccagcttctcctatagtgacgtcagaacccactcctatggcagttcagt 5436
Query: 482 ccccaatggtggaaccttcgcgccctatttctcctcctattccggaccaggaccccccat 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 ccccaatggtggaaccttcgcgccctatttctcctcctattccggaccaggaccccccaa 5496
Query: 542 tacaagaacctcccgctcttttatccacatacaagaagcaacatgaagatatagaaaagt 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 aacaagaacctcccgctcttttatccacatacaagaagcaacatgaagatatagaaaagt 5556
Query: 602 acatcgacgtagcttcaccgcatattatggtggattgtttctcgtacccagaacaaggcg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 acatcgacgtagcttcaccgcatattatggtggattgtttctcgtacccagaacaaggcg 5616
Query: 662 gcattccaggctccacaccgttggta 687
||||||||||||||||||||||||||
Sbjct: 5617 gcattccaggctccacaccgttggta 5642
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4704
Number of Sequences: 1807
Number of extensions: 4704
Number of successful extensions: 907
Number of sequences better than 1.0e-20: 1
length of query: 687
length of database: 10,358,551
effective HSP length: 16
effective length of query: 671
effective length of database: 10,329,639
effective search space: 6931187769
effective search space used: 6931187769
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 49 (99.3 bits)